Insight Made Easy

Get the precise results your research deserves with our complete offering of automated, efficient data analysis software. Whether you're evaluating single cells, real-time PCR results or genotyping data, our advanced software programs include standard analysis techniques as well as superior interpretation methods to help you make the most of your work.

Script Hub

Script Hub™ is your central source for C1™ methods and applications. Get access to scripts and other applications developed by Fluidigm and the C1 community, including epigenetics, mRNA sequencing, DNA sequencing, cell staining and more.

Callisto System Software v3.8.13

The latest operating system upgrade for the Callisto™ system. To install, follow the instructions found in the Callisto System User Guide (in Chapter 3, see Update the System).

Script Builder Software v2.1.1

C1 Script Builder™ allows you to create innovative single-cell applications to deeply explore cellular heterogeneity and the functional attributes of every cell population. Download the latest version of Script Builder here, then follow the instructions for installation. Note: Script Builder can be used without a license to design custom protocols. A license is required to transform custom protocols into scripts and install them on your C1 system.

C1 System Software v2.2.1

The C1 system supports DNA sequencing, mRNA sequencing, targeted gene expression, miRNA analysis and additional applications through the C1 Open App™ IFC (integrated fluidic circuit). Download the C1 system software update and then follow the instructions for updating the C1 system software.

Callisto Experiment Planner v2.0.1

Easily design and create intricate multifactorial dosing, feeding and harvesting protocols for your cell modeling experiment on Callisto. Save and share protocols with colleagues to ensure reproducible and reliable cell culture results.

Access Array™ Firmware and Software Update

Firmware and software update v2.8

Access Array™ FC1™ Cycler Software

FC1 Cycler software update to enable running the 48.48 Targeted DNA Sequencing Library Preparation system protocol on the Access Array™ system.

Biomark & EP1 Software

Data Collection Software

SNP Genotyping Analysis
Our innovative SNP Genotyping software, is designed specifically for analyzing genotyping data acquired from Biomark or EP1 systems. Advanced features include cluster-calling algorithm technology, multiple IFC scoring and automatic confidence score ratings.

Real-Time PCR Analysis
Quick and efficient Real-Time PCR Analysis software helps you easily establish standard curves, calculate delta delta Ct and automatically determine the ideal threshold setting for each run. Specifically created for Biomark™ systems.

Digital PCR Analysis
Featuring tools specific to digital PCR, our innovative software offers real-time analysis, automated copy number variation, endpoint imaging and the ability to quantitate up to four targets per sample using multiple reporter dyes. Designed for use with Biomark™ and EP1™ systems.

Melt Curve Analysis

Singular Analysis Toolset User Guide v3.5.2

Singular Analysis Toolset user guide.

Singular Analysis Toolset Software v3.5.2

An innovative, open-source solution for analyzing and visualizing data, the Singular™ Analysis Toolset offers powerful methods for identifying gene expression and mutation patterns at the single-cell level. Designed for use with Biomark and C1 systems.

Singular Analysis Toolset Practice Sets v3.5.2

Practice your Singular Analysis Toolset software skills with this set of sample scripts. Validate your technique before you commit valuable resources.

IFC Controllers Software (HX, MX, RX, and WX)

Copy and extract HX, MX, RX and WX folders on to a USB drive. Place the folders into the root directory of the drive. DO NOT place the folders into another subfolder or the instrument will not recognize the folder names. Follow the instructions found in the IFC Controller user guide that came with your controller.

Debarcoder v1.04

The Debarcoder application debarcodes combined data for multiplexed samples in order to perform downstream analysis.

Helios™ Software v6.5.358

Helios Software v6.5.358

Fluidigm Cytobank Analysis

Cytobank cloud-based data analysis software turns high-content data into high-impact knowledge by providing tools optimized for mass cytometry, including clustering (SPADE and viSNE), heat maps, dot plots, histograms and statistics, along with the ability to share your data with colleagues and collaborators.

Juno Software

Juno™ software update to enable running the Juno Targeted DNA Sequencing Library Preparation system protocol version 3.7.1