What types of analysis software do people usually use after your platform?
The Singular Analysis Toolset from Fluidigm provides a set of software functions for higher-level expression analysis using R. This tool can perform multiple analyses including principal component analysis and hierarchical clustering. You can download the latest Singular software package along with a user manual and example datasets from the Fluidigm website.
GenEx software will accept Fluidigm output files and can combine multiple IFC runs. Other popular and compatible software packages are Spotfire®, GeneSpring®, MultiD and Tableau®.